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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78605211_78605542_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78605211 - 78605542
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TAAAAATCACCC
Flanking Amino Acid:
ETWIWSLVSVSSEGNAELDV
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
75.4
0.57
1
69.3
41.7
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
39.2
-0.8
2
48.46
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980