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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78605658_78606260_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78605658 - 78606260
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAAGGAA
5'SS Class:
major
3'SS Sequence:
TTATCATCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGTTTGGAATT
Flanking Amino Acid:
MLPNYDARTGDSARMYASPM
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
62.9
37.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
72.7
0.51
0.8
71.1
34.6
Minor 5ss
28.4
-2.5
3.6
37.4
47.4
Minor BPS
48.5
-0
2.1
71.5
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980