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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78606394_78607002_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78606394 - 78607002
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAACCT
5'SS Class:
major
3'SS Sequence:
TTCTCTTCCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AAAAAAATAAAT
Flanking Amino Acid:
NEDDTYSILKEMGLKVFTNS
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
65.2
38.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
80.1
0.68
0.7
77
25
Minor 5ss
35.7
-1.6
3.3
49.6
40.5
Minor BPS
40.3
-0.6
1.9
55.02
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980