About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78607970_78609808_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78607970 - 78609808
Intron Length:
1839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGGATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGGAT
U12 Branch Point Sequence:
GCATCTGTGACA
Flanking Amino Acid:
FNIEKCFSNKVDLGFSTSEG
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
56.3
0.16
1.5
57.1
49.4
Major PPT
64.4
0.32
1.1
56.6
42.7
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
48.9
-0
2
59.23
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980