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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78610512_78610851_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78610512 - 78610851
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TCTCCTTCCATT
Flanking Amino Acid:
EERKIVFYYLVMAKGIIKQS
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
65
0.37
1.3
76.1
38
Major PPT
79.4
0.66
0.8
77.5
30.2
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
48.3
-0
1.9
69.06
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980