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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78611080_78612507_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78611080 - 78612507
Intron Length:
1428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTCAT
5'SS Class:
major
3'SS Sequence:
TCTCCATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
ATTTTCTCCATT
Flanking Amino Acid:
MLELESVGIRATHKSYSQCF
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1
67.7
39.3
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
82
0.72
0.8
73.2
36.1
Minor 5ss
31.7
-2.1
3
37.7
40.9
Minor BPS
54.6
0.22
2
77.99
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980