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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78613266_78613501_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78613266 - 78613501
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTCTTCAATC
Flanking Amino Acid:
VEAKIKEEETGVVLTGTSFS
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
86.1
0.81
0.7
81
24.2
Minor 5ss
43.2
-0.7
2.9
57.1
47.2
Minor BPS
64.5
0.43
1.5
70.29
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980