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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78613617_78614645_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78613617 - 78614645
Intron Length:
1029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAC
U12 Branch Point Sequence:
TTTCCTCCAACA
Flanking Amino Acid:
KAVCEEFSGQTDNHGCISEV
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.7
83.1
30.9
Major BPS
65.6
0.39
1.1
67.7
34.6
Major PPT
78.3
0.64
0.8
74.2
29.5
Minor 5ss
30.4
-2.2
2.9
40.4
45.7
Minor BPS
55.4
0.17
1.9
74.2
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980