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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78614767_78615604_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78614767 - 78615604
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
TCCCTGCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTCTTTCTATCC
Flanking Amino Acid:
DEKLQVTVCGLYTFGKPVPG
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
70.5
33.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
74.4
0.55
0.8
68.8
31.7
Minor 5ss
34.4
-1.8
3.4
49.4
41.4
Minor BPS
49.5
-0
1.9
65.93
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003658
78592681 - 78615660
22980