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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78617448_78617963_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78617448 - 78617963
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ACATTCTAAATA
Flanking Amino Acid:
DESFLPVNEVFPLVYIEDPK
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
85.5
30.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80.8
0.69
0.7
73.2
31.7
Minor 5ss
29.1
-2.4
3.8
39.2
40.5
Minor BPS
55.7
0.17
1.6
61.61
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041436
78617023 - 78621591
4569