About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78618017_78618914_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78618017 - 78618914
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGGG
5'SS Class:
major
3'SS Sequence:
TTTTCTCCATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTATAT
U12 Branch Point Sequence:
TTTTTCTCCATC
Flanking Amino Acid:
DKPIYKPGQTVLFRIVSLDE
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.36
1.2
51.9
45.4
Major BPS
57.9
0.2
1.1
55
40.4
Major PPT
83
0.74
0.8
83
27.2
Minor 5ss
34.3
-1.8
3.5
47.6
47.8
Minor BPS
56.1
0.17
2
73.85
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041436
78617023 - 78621591
4569