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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78619075_78619698_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78619075 - 78619698
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TGTCATTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCCATAACA
Flanking Amino Acid:
KDIFTCIPFSIPKLSIQSPV
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
74.7
35.4
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
74.4
0.55
0.9
65.7
40.6
Minor 5ss
37.8
-1.4
3
55.7
41.6
Minor BPS
75.8
0.81
1.6
84.58
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041436
78617023 - 78621591
4569