About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78619883_78621493_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
78619883 - 78621493
Intron Length:
1611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGCTAC
5'SS Class:
weak_major
3'SS Sequence:
CCCCTCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTCCTCTGACCT
Flanking Amino Acid:
DASPVSPITEPQYMVLLPFL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.4
60.6
41.3
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
76.1
0.59
0.7
68.3
32
Minor 5ss
46
-0.4
2.8
63.4
41.6
Minor BPS
48.4
-0
1.8
65.4
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041436
78617023 - 78621591
4569