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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78648860_78649521_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
78648860 - 78649521
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTACTTATTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TGTTTCCTAATT
Flanking Amino Acid:
KRFCSMTCAKRYNVSCSHQF
Intron Amino Acid Position:
763

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
70.7
33.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
58
0.18
1.7
69.9
40
Minor 5ss
30.8
-2.2
3.3
40
45.5
Minor BPS
68.6
0.66
1.6
85.16
35

Associated Gene:

Gene:
PHC1
Ensembl Gene ID:
ENSAPLG00000002713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020347
78647114 - 78660555
13442
ENSAPLT00000002782
78647454 - 78660555
13102