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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78655407_78656334_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78655407 - 78656334
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CCATCCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GTTCCTTTCATT
Flanking Amino Acid:
NQSQAQMYLRPQLGNLLQVN
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.1
35.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
64.7
0.33
0.9
58.6
31.4
Minor 5ss
31.7
-2.1
3.4
39
46.2
Minor BPS
60.3
0.41
1.7
77.88
38.9

Associated Gene:

Gene:
PHC1
Ensembl Gene ID:
ENSAPLG00000002713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020347
78647114 - 78660555
13442