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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78658618_78660398_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78658618 - 78660398
Intron Length:
1781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACAC
5'SS Class:
major
3'SS Sequence:
CCTCTTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACA
Flanking Amino Acid:
MSLYERQAVQALQALQRQPN
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
66
40.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.9
0.67
0.7
72.9
32
Minor 5ss
30.9
-2.2
3.3
41.2
45.5
Minor BPS
80.4
0.95
1
83.49
30.3

Associated Gene:

Gene:
PHC1
Ensembl Gene ID:
ENSAPLG00000002713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020347
78647114 - 78660555
13442
ENSAPLT00000002782
78647454 - 78660555
13102