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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78673492_78674634_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78673492 - 78674634
Intron Length:
1143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATACAT
U12 Branch Point Sequence:
CTCACCATACAT
Flanking Amino Acid:
TVRVYDYYKPDDRTAREYNS
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
62.6
0.31
1.1
70.6
34.3
Major PPT
86.6
0.82
0.7
80.9
31.3
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
45.2
-0.2
2
62.73
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031102
78673445 - 78768226
94782