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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78674738_78675043_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78674738 - 78675043
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GCATTTTTGATC
Flanking Amino Acid:
TDRVTIYLEELDKTSLKLNI
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85.7
0.8
0.7
77.7
31.1
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
56
0.17
1.2
57.62
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031102
78673445 - 78768226
94782