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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78675900_78677006_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78675900 - 78677006
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CCTTCTGCATCT
Flanking Amino Acid:
RKQLDIHISVSYIGDRGTSN
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.1
28.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
82.7
0.74
0.8
80.5
31.5
Minor 5ss
40.4
-1.1
3.2
57.3
47.4
Minor BPS
43.3
-0.4
2.3
63.14
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031102
78673445 - 78768226
94782