About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78677129_78766869_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78677129 - 78766869
Intron Length:
89741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTTGC
5'SS Class:
major
3'SS Sequence:
TCTCCTCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
TTCTCCTCCACC
Flanking Amino Acid:
AHGSCCVFTRSTLYYNTPPP
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
64.1
43.4
Major BPS
68.7
0.46
1
71.3
34
Major PPT
73.8
0.54
0.9
66.9
34.1
Minor 5ss
38.7
-1.3
3.1
43.4
44.3
Minor BPS
60.4
0.31
2
74.59
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031102
78673445 - 78768226
94782