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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78698115_78698817_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78698115 - 78698817
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
AATGCTTTACTA
Flanking Amino Acid:
DKALYKPGETVKFRIVNLDN
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
86
0.81
0.8
77.7
40.6
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
53.2
0.1
1.7
62.21
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023652
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027345
78697954 - 78703726
5773