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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78698963_78700314_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
78698963 - 78700314
Intron Length:
1352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAGCTGTG
5'SS Class:
weak_major
3'SS Sequence:
TTTACTCTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTTACT
Flanking Amino Acid:
TFECITFQVSSEEVVFLHVL
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.3
50.9
46.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.7
0.6
1
72.8
37.4
Minor 5ss
42.4
-0.8
3.5
57.4
47.3
Minor BPS
67.8
0.64
1.8
89.13
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023652
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027345
78697954 - 78703726
5773