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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78703801_78705601_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78703801 - 78705601
Intron Length:
1801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGAACC
5'SS Class:
major
3'SS Sequence:
TTTATTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTTTAAAG
Flanking Amino Acid:
LPCAAGTSAVINYAVAIPSQ
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.6
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.8
0.69
1
82.3
33.1
Minor 5ss
37.2
-1.5
3
50.1
39
Minor BPS
66.8
0.39
1.4
68.96
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015239
78703733 - 78731693
27961