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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78705789_78706106_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78705789 - 78706106
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTATGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTACGAT
U12 Branch Point Sequence:
TTCAGCTTCAGT
Flanking Amino Acid:
LVFFHCTSFQVPPPVGQPEE
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
62
0.3
1.4
60.8
45.4
Major PPT
74.5
0.55
0.9
66.9
39.8
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
45.3
-0.2
2.4
67.89
48.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015239
78703733 - 78731693
27961