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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78708133_78708574_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78708133 - 78708574
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
CTCTCCTTACTG
Flanking Amino Acid:
RTHTFSVEEYVLPKFSVSIQ
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.2
36.3
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
81.1
0.7
0.8
75.8
32.9
Minor 5ss
33.9
-1.8
3.7
46.6
43.5
Minor BPS
60.4
0.19
1.8
62.41
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015239
78703733 - 78731693
27961