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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78708660_78709200_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78708660 - 78709200
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGCTGA
5'SS Class:
major
3'SS Sequence:
GCTATTTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATGTATGTAAGC
Flanking Amino Acid:
EETFHLHICGMYTYGKPVQG
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
64
38.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
71.6
0.49
1.1
65
45.5
Minor 5ss
40.2
-1.1
3
50.9
46
Minor BPS
43.9
-0.4
2.3
56.97
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015239
78703733 - 78731693
27961