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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78709322_78710162_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78709322 - 78710162
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCATTTTCACT
Flanking Amino Acid:
RSICKDYTGKTNEDGCFTTE
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.1
0.59
0.8
73.5
31.4
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
56.3
0.28
1.8
75.45
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015239
78703733 - 78731693
27961