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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78711913_78713165_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78711913 - 78713165
Intron Length:
1253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAAGGCC
5'SS Class:
major
3'SS Sequence:
TTCTATGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TCTTTGATGACT
Flanking Amino Acid:
AWNNSEVRLQAKTQPEEFSS
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
61.1
39.4
Major BPS
84
0.85
0.9
75
39.9
Major PPT
74.3
0.55
0.9
68.4
37.2
Minor 5ss
26.2
-2.7
3.3
34
41.7
Minor BPS
48.8
-0
2.3
75.3
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015239
78703733 - 78731693
27961