About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78713565_78714085_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78713565 - 78714085
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAC
U12 Branch Point Sequence:
TCTCCCTTTACT
Flanking Amino Acid:
QTRVLLDPQVGQYSGTFKIS
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
61.7
0.29
1.1
55
40.4
Major PPT
75.9
0.58
0.8
76.4
32.2
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
72.5
0.79
1.6
86.01
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015239
78703733 - 78731693
27961