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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78714232_78714374_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78714232 - 78714374
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TCTTCTTCCATT
Flanking Amino Acid:
LKVSKCFRNHVKLGFSDTVA
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1.2
81.4
32.7
Major BPS
65
0.37
1.3
76.1
38
Major PPT
84.5
0.78
0.8
81.8
28.5
Minor 5ss
37.4
-1.4
2.7
45
36
Minor BPS
53.6
0.19
2
75.4
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015239
78703733 - 78731693
27961