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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78714525_78715331_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78714525 - 78715331
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTGTTTTCATT
Flanking Amino Acid:
RPEAELSRANVYNMFSYPQE
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
82.2
25.6
Major BPS
100
1.24
0.5
100
0
Major PPT
79.6
0.67
0.8
73.2
31.7
Minor 5ss
40.8
-1
3
53.7
43.8
Minor BPS
48.3
-0
1.8
64.47
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015239
78703733 - 78731693
27961