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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78715527_78715996_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78715527 - 78715996
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATTTA
5'SS Class:
major
3'SS Sequence:
TTCTTTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TTTTCTTCCCCT
Flanking Amino Acid:
SQPDVYGLLRNSGLTFLTSL
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
77.4
33.8
Major BPS
62
0.3
1
53
34.1
Major PPT
84
0.76
0.7
77.2
31.6
Minor 5ss
42.7
-0.8
2.9
49.3
47
Minor BPS
42.2
-0.5
3.7
79.65
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015239
78703733 - 78731693
27961