Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78718926_78719225_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78718926 - 78719225

Intron Length:

300

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

GTTTCACCTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAC

U12 Branch Point Sequence:

GTAACCTGAATT

Flanking Amino Acid:

VFNYLKQCMVLQLSLMNSSD

Intron Amino Acid Position:

833

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

68.4

36.9

Major BPS

72.3

0.55

1.2

77.4

37.4

Major PPT

73.1

0.52

0.9

63.9

38.3

Minor 5ss

27.7

-2.6

31.6

37.6

Minor BPS

63.7

0.51

1.5

75.97

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014443

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015239

78703733 - 78731693

27961