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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78720590_78721021_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78720590 - 78721021
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TTCTGTTGTACA
Flanking Amino Acid:
GTERAHISFLGDILGTALDN
Intron Amino Acid Position:
960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.7
29.4
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
80.3
0.68
0.9
75.5
38.4
Minor 5ss
33.8
-1.8
3
42.5
44.5
Minor BPS
46.5
-0.2
2.2
63.46
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015239
78703733 - 78731693
27961