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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78721199_78721525_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78721199 - 78721525
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTACTT
Flanking Amino Acid:
KQKAIGYLESGYQRQLLYKH
Intron Amino Acid Position:
1019

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
79.3
28.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86
0.81
0.7
80.9
24.2
Minor 5ss
31
-2.2
3.2
36.8
41.9
Minor BPS
52.3
0.15
2.2
81.93
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015239
78703733 - 78731693
27961