Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78723334_78723539_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78723334 - 78723539

Intron Length:

206

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTGAGTAAC

5'SS Class:

major

3'SS Sequence:

ACTTGCATCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATCAAT

U12 Branch Point Sequence:

TGTGCTTTTACT

Flanking Amino Acid:

ALIHAGTPRSDPAVQKALKC

Intron Amino Acid Position:

1124

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.52

1.1

70.8

34.7

Major BPS

69.1

0.47

1.2

34.1

Major PPT

64.9

0.34

0.9

55.6

39.5

Minor 5ss

33.5

-1.9

2.8

46.6

41.8

Minor BPS

63.6

0.51

1.7

80.6

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014443

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015239

78703733 - 78731693

27961