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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78724850_78725568_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78724850 - 78725568
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACCA
5'SS Class:
major
3'SS Sequence:
TATGTCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
TTTTTGCCAACT
Flanking Amino Acid:
VQGHGCLFLQAILQYHIPPP
Intron Amino Acid Position:
1325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.2
38
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
70.7
0.47
1
65.6
40.8
Minor 5ss
32.3
-2
3
40.9
44.8
Minor BPS
48.3
-0
2.5
80.59
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015239
78703733 - 78731693
27961