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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78729102_78729810_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78729102 - 78729810
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TGTATCTCACTG
Flanking Amino Acid:
NIKVYDYYMPEETTVISYNA
Intron Amino Acid Position:
1451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
80.2
30.7
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
86.7
0.83
0.7
84.4
23.4
Minor 5ss
42
-0.9
3
55.3
48.9
Minor BPS
46
-0.4
1.9
52.61
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015239
78703733 - 78731693
27961