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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78729853_78730693_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
78729853 - 78730693
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAG
U12 Branch Point Sequence:
TTTGTCTCCACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
44.9
-0.3
1.4
52.7
34.2
Major PPT
82
0.72
0.8
76.7
32.1
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
50.3
0
2.1
70.77
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015239
78703733 - 78731693
27961