About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78744952_78745078_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78744952 - 78745078
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GGCACTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTTAT
U12 Branch Point Sequence:
TGCCCAGTTATT
Flanking Amino Acid:
VFNYLQQCIQIQVSLAKSPD
Intron Amino Acid Position:
887

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
80.6
31.9
Major BPS
61.2
0.28
1.2
53
42.8
Major PPT
66.4
0.37
0.9
62.1
39.7
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
40.7
-0.6
2.3
59.33
43.7

Associated Gene:

Gene:
A2ML1
Ensembl Gene ID:
ENSAPLG00000025632
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048499
78744053 - 78759702
15650