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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78745305_78745961_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78745305 - 78745961
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ACTTCCTTATGC
Flanking Amino Acid:
ETWIWNLFSVGSNGSRSIPV
Intron Amino Acid Position:
811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
32.7
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
86.4
0.82
0.7
84.7
23
Minor 5ss
33.9
-1.8
3.3
40.8
45.4
Minor BPS
58.4
0.24
1.9
68.36
43.4

Associated Gene:

Gene:
A2ML1
Ensembl Gene ID:
ENSAPLG00000025632
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048499
78744053 - 78759702
15650