About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78746985_78747207_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78746985 - 78747207
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATCATC
5'SS Class:
major
3'SS Sequence:
CTTTCTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
CTTTCTCCAACA
Flanking Amino Acid:
FQPDIFNLFWNMGLKIFSNL
Intron Amino Acid Position:
751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
69
42.1
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
78.2
0.63
0.8
74
29.7
Minor 5ss
43.6
-0.7
2.9
53
44.1
Minor BPS
56
0.19
1.9
72.2
40

Associated Gene:

Gene:
A2ML1
Ensembl Gene ID:
ENSAPLG00000025632
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048499
78744053 - 78759702
15650