About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78749141_78749387_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78749141 - 78749387
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCTT
5'SS Class:
strong_major
3'SS Sequence:
GATCTCCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ATTTCCTTATGT
Flanking Amino Acid:
AWNSSSVFLEGRFTLEDLTH
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
73.7
0.53
0.9
69.8
36.2
Minor 5ss
39.5
-1.2
3.2
58.6
45.9
Minor BPS
67.8
0.64
1.9
86.33
39.7

Associated Gene:

Gene:
A2ML1
Ensembl Gene ID:
ENSAPLG00000025632
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048499
78744053 - 78759702
15650