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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78750682_78751645_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78750682 - 78751645
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CCAGCCTCAAAT
Flanking Amino Acid:
KDICREYSGQTVSKGCFTPS
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
83.8
0.76
0.8
78
29
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
48.9
0
1.8
62.15
47.3

Associated Gene:

Gene:
A2ML1
Ensembl Gene ID:
ENSAPLG00000025632
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048499
78744053 - 78759702
15650