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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78751758_78753557_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78751758 - 78753557
Intron Length:
1800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
GGCAGCTCATCT
Flanking Amino Acid:
DKTFPLRVCGRYHYGKAVQG
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
80.3
0.68
0.8
73.8
31.3
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
41.3
-0.5
2.1
54.61
46.4

Associated Gene:

Gene:
A2ML1
Ensembl Gene ID:
ENSAPLG00000025632
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048499
78744053 - 78759702
15650