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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78753643_78754102_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78753643 - 78754102
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
CTGCCTTTGACA
Flanking Amino Acid:
VSSTFKVEEHVLQKFDVFFE
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
65.2
41.6
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
91.3
0.93
0.7
84.6
36
Minor 5ss
37.5
-1.4
3
44.3
45.4
Minor BPS
64.2
0.44
1.3
67.34
39.5

Associated Gene:

Gene:
A2ML1
Ensembl Gene ID:
ENSAPLG00000025632
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048499
78744053 - 78759702
15650