About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78756795_78757339_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78756795 - 78757339
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAA
U12 Branch Point Sequence:
GTCTCTACAACA
Flanking Amino Acid:
DKAIYRPGQTVKFRIVTLTE
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.9
35.3
Major BPS
61
0.27
1.1
69.2
36.3
Major PPT
88
0.85
0.6
85.7
21.4
Minor 5ss
33.5
-1.9
3.4
47.6
48
Minor BPS
51.1
0.03
1.8
65.35
40.9

Associated Gene:

Gene:
A2ML1
Ensembl Gene ID:
ENSAPLG00000025632
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048499
78744053 - 78759702
15650