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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78767491_78767937_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78767491 - 78767937
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TATTATCTACTT
Flanking Amino Acid:
DMLDQKAIRAGGQIHWSQSP
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.1
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
86.8
0.83
0.7
80.1
31.9
Minor 5ss
34.7
-1.7
3.5
45.4
49.7
Minor BPS
47.2
-0.1
2
70.63
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031102
78673445 - 78768226
94782