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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78768101_78768139_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
78768101 - 78768139
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTTTGTGTG
5'SS Class:
weak_major
3'SS Sequence:
ACTTTCTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
ATCAATGTAACT
Flanking Amino Acid:
CVPLCLPTSCSTVVRKALGC
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.3
53.9
43.2
Major BPS
70.2
0.5
1
72.1
33
Major PPT
79.2
0.66
0.8
74.3
30.2
Minor 5ss
40.7
-1
3.1
51
45.5
Minor BPS
47
-0.1
2.2
67.73
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022197
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031102
78673445 - 78768226
94782