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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78810152_78822505_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78810152 - 78822505
Intron Length:
12354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGGTTTC
5'SS Class:
major
3'SS Sequence:
AATATTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTTTCCTCCACA
Flanking Amino Acid:
SFYVCEANANECNACEKLMD
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
75.2
35.8
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
72.5
0.51
0.9
65.7
40
Minor 5ss
45.8
-0.4
3.1
65.2
39.7
Minor BPS
67.6
0.55
2
83.78
36.8

Associated Gene:

Gene:
RIMKLB
Ensembl Gene ID:
ENSAPLG00000014066
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025909
78809659 - 78868036
58378